SubtiBank SubtiBank
yrkH [2019-08-27 13:16:57]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

yrkH [2019-08-27 13:16:57]

unknown
locus
BSU_26510
pI
4.85
mw
32.73 kDa
protein length
377 aa Sequence Blast
gene length
1134 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    2,711,109 2,712,242

    The protein

    [SW|Domains]

  • C-terminal metallo--lactamase domain (according to UniProt)
  • Rhodanese domain (aa 19-114) (according to UniProt)

    • Structure

  • [PDB|3R2U] (metallo--lactamase from Staphylococcus aureus, corresponds to the C-terminal domain of [protein|06CC915A18E5ADD42B784B7BBBFD4C344559A34E|YrkH], aa 142 ... 353, 31% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|6AD1DD074B2F044C6A4E4B98FABC4E7FD67B3139|yrzM]-[gene|8A3F1BFDF85DD96B7FB4EBC807F71639AF69DE98|yrkD]-[gene|1F1FE531622CD218EE8990CDAC6D2D2F9E86FE3F|yrkE]-[gene|5FC3DF596816AA4E8541B324EC6DE6D89C90C8E2|yrkF]-[gene|06CC915A18E5ADD42B784B7BBBFD4C344559A34E|yrkH]-[gene|D996F581E21395C3F9CC064800C49A765EFC17A7|yrkI]-[gene|F3E842844B315FE438F66995CDFB8BA1C32BDF23|yrkJ]-[gene|1BEBD09273240B6B50DABCB160FCCBC205BB2AAE|yrkK]-[gene|search|yrkM]
    description
    [Pubmed|22383849]
    view in new tab

    genes
    [gene|6AD1DD074B2F044C6A4E4B98FABC4E7FD67B3139|yrzM]-[gene|8A3F1BFDF85DD96B7FB4EBC807F71639AF69DE98|yrkD]-[gene|1F1FE531622CD218EE8990CDAC6D2D2F9E86FE3F|yrkE]-[gene|5FC3DF596816AA4E8541B324EC6DE6D89C90C8E2|yrkF]-[gene|06CC915A18E5ADD42B784B7BBBFD4C344559A34E|yrkH]-[gene|D996F581E21395C3F9CC064800C49A765EFC17A7|yrkI]
    description
    [Pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-C463 (yrkH::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2461 NBRP B. subtilis, Japan]
  • BKE26510 ([gene|06CC915A18E5ADD42B784B7BBBFD4C344559A34E|yrkH]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE26510 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATACCTCCTATATCAAAT, downstream forward: _UP4_TAACACAAGTTTCTGCTAAA
  • BKK26510 ([gene|06CC915A18E5ADD42B784B7BBBFD4C344559A34E|yrkH]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK26510 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATACCTCCTATATCAAAT, downstream forward: _UP4_TAACACAAGTTTCTGCTAAA